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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacacttgatcattggaaggtcgtgatttttttctttagctgtaaattttcttaggagtaccagtttcactgacaagaatttctggattgtgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAAATGGTTCCCATGAGGTGTCATTGTTGTCAAATAATTATATGAATTGGT

Basic information

species Glycine max
transcript GLYMA18G46140.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693048|gb|AW761146.1|AW761146
EST:     GCGTGACTGGNGCATTTGGATTTGTTTCGTCTATAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTGCAAAAC
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAAC
EST: gi|14009204|gb|BG725808.1|BG725808
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|14992012|gb|BI317685.1|BI317685
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
EST: gi|192295382|gb|FG986996.1|FG986996
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|58019988|gb|CX706730.1|CX706730
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|22523238|gb|BU082049.1|BU082049
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|20448328|gb|BQ252452.1|BQ252452
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAA
EST: gi|213594875|gb|DB977217.1|DB977217
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|17400319|gb|BM177101.1|BM177101
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|58023442|gb|CX710183.1|CX710183
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|22523317|gb|BU082128.1|BU082128
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|7926211|gb|AW832237.1|AW832237
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTC
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTC
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|7693120|gb|AW761217.1|AW761217
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAG
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAG
EST: gi|21602594|gb|BQ612925.1|BQ612925
EST:     CTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: CTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|192332475|gb|FK024236.1|FK024236
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|16348826|gb|BI974421.1|BI974421
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
EST: gi|7925277|gb|AW831303.1|AW831303
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTG
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTG
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGA-TAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: gi|7693089|gb|AW761187.1|AW761187
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAA
EST: gi|15661823|gb|BI699194.1|BI699194
EST:     GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG                         TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcttaggagtaccagtttcactgacaagaatttctggattgtgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAAATGGTTCCCATGAGGTGTCATTGTTGTCAAATAATTATATGAATTGGT
                      cactgac  putative branch site (score: 2)
                             aagaattt  TA-rich tract