1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatttggcccattcccaatctttggctcaattgtttgatctttcatattaattaatactagtattttgttacgtaacgactttgtttcacatctgcagtGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATG
species | Glycine max |
transcript | GLYMA18G44590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATCATCTTATTTCACTGCCTTGATCAGT GGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATEST: gi|7284786|gb|AW597211.1|AW597211
genomic: GATCATCTTATTTCACTGCCTTGATCAGGttcttgaaac ... catctgcagtGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCAT
EST: GATCATCTTATTTCACTGCCTTGATCAGT GGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCAT
genomic: GATCATCTTATTTCACTGCCTTGATCAGGttcttgaaac ... catctgcagtGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCAT
atattaattaatactagtattttgttacgtaacgactttgtttcacatctgcagtGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATG
aattaatactagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttggcccattcccaatctttggctcaattgtttgatctttcatattaattaatactagtattttgttacgtaacgactttgtttcacatctgcagtGGTGCAGTGGTGGCATTCTATATCTATAGAATAGTACTGGAACGTAATCATCAAAAGAGCTCAAACTTGGAAACTGAACCAGGAAACTAGTTCTATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - cattccc
- - - - - - - - - - ctttggc
- - - - - - - - - - - - - - - -ttgtttg