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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgtatggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG

Basic information

species Glycine max
transcript GLYMA18G44550.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g21680.3 (Oryza sativa), 3'ss of exon 5
gtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgtatggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG
                                                                          || | ||| |           | | | |  |  |   ||   |||   ||  |   |||| ||||     |      ||  | || |     |   | ||||||| ||||||| ||||| || |||||||| || ||||||||||||||||| || |||||||| || ||||| || |||||||||||||||||||||||||| |||||
------------------------------------------------------------------------ccagcattttttccctactatttgaccttaattgattactcaccatg---ttcaaca-aagaattgacaccct------tttgttttgtgaacatgtttcacttttg-cagGGGCAAATGATGTTTCAATGATACAGATGGCAGATGTTGGTGTTGGAATATGTGGTCAAGAAGGTCGTCAAGCAGTGATGGCATCAGATTTTGCCATGGG

upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G398288_T01 (Zea mays), 3'ss of exon 4
gtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgtatggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG
                                                                     |  ||  || | |   ||| | ||     ||||  |  |||  |    |   |||  | ||||      |   || |    || | |    | |   || ||  |||||| ||||||| ||||| || |||||||| || ||||| ||||||||||| || |||||||| || ||||| || || ||||||||||| ||||| |||||||||||
---------------------------------------------------------------------tccatcttattct---tgggaatc-----ttcatattatgtcacactttaagtttccaagtaacgcg-aagacaacagagtctcattaccctgt---ttaat--cttttggcagGGGCAAATGATGTTTCAATGATACAGATGGCTGATGTTGGTGTTGGCATATGTGGTCAAGAAGGTCGTCAGGCAGTGATGGCTTCAGACTTTGCTATGGG

upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 4
gtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgtatggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG
                                                                            |    || |   ||  ||      |  ||  ||  | || |     || | ||  ||  | |  ||  | |    ||  |   | ||  |      || | || |||| ||||| || || |||||||| |||||||||||||||||||| || |||||||| ||||| ||||| |||||||| |||||||| |||||||| |||||
---------------------------------------------------------------------------cttgcctgcacaccaccccccctcccctcttctgggtacacaca---ttggttgctaggctggtattgctct----ttccttcctcttactactgacacctgtg-cagGTGCCAACGATGTTTCAATGATTCAAATGGCAGATGTTGGTGTGGGAATATGTGGTCAGGAGGGGCGTCAAGCAGTAATGGCATCGGATTTTGCAATGGG

upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S39_64V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagttatttataatatgaaattgcacttaatttgcatttgggtgttgttgtgaggcctggttgatggttgatagtaatttgtatggcagtccaggcttcagctagtgtttccagatggattttgatgtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG
                                                              ||  || ||  |||||| ||| | |    || |  ||||||   ||  |   | |||  | ||  |     | || |||  || | |      |   | |||||              ||||||| || |||||||||||||| |||||||| |||||||| || || ||  | |||||||||||||| |||||||| ||||| || |||||||| |||||
--------------------------------------------------------------ttcgtg-ttactagtaagttg-aagctcttcaaaacttcag---gttctcttacatgtgtctt--tagtgcactttattacatgtcacaaggcttgctattgtt--------------cagGGGCAAACGACGTGTCAATGATACAAATGGCTGATGTTGGAGTTGGCATCAGCGGGCAGGAAGGGCGACAAGCAGTTATGGCGTCTGATTTTGCAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagatttgatttaatatgaacttaatcttttttgttttgattacttttgacagGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGGATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGG
                                    ttttgat  putative branch site (score: 4)
                                          ttactttt  CT-rich tract
     atttgatttaatatga  TA-rich tract