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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtgggtacaatacacattaatctcatgatccatcacttttgagttctgaatgtcaattatcagaagcttgattggtggaagtattctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA

Basic information

species Glycine max
transcript GLYMA18G43310.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43310.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 7
ggtgggtacaatacacattaatctcatgatccatcacttttgagttctgaatgtcaattatcagaagcttgattggtggaagtattctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA-
 || |||    || |     ||  |||| |   |    |  || ||||    ||  ||||||||   ||   |   |   ||       | ||| ||||||||||||| || |||||||| |||||||||||  |||| ||| |  | ||||| || ||||| ||||| || |||||||| 
-gtaggtctcttaaatgggcattacatgttt--tttgctgagaattcttctagttgattatcagttcctgactctttttgag-------ccttatagGCAGGGCATGACTTTCCTATAGTTTTTTACCTTGCTCTGGGTGGATCTTTGCTGTCCTACATATACTCTGCTCCGCCTTTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284537|gb|BE022105.1|BE022105
EST:     TGGGTGTTGCTGCTTGGTGGTCTATCTATGGCTGGTATATTGGACATATG                         GGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTTGGCGGAGCCCT
genomic: TGGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGggtgggtaca ... ctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCT
EST: gi|192327509|gb|FK017840.1|FK017840
EST:     GGTGTTGCTTCTTGGTGGTCTTTCTCTGGCTGGTATATTGGGACATATG
genomic: G-TGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGG-ACATATG
EST: gi|16276277|gb|BI941773.1|BI941773
EST:     GTGGTCTTTCTCTGGCTGGTATATTGGACATATG                         GGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCT
genomic: GTGGTCTTTCTCTGGCTGGTATATTGGACATATGggtgggtaca ... ctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCT
EST: gi|16349016|gb|BI974611.1|BI974611
EST:     TGGGTGTTGC--CTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATG                         GGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCT
genomic: TGGGTGTTGCTGCTTGGTGGTCTTTCTCTGGCTGGTATATTGGACATATGggtgggtaca ... ctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttctgaatgtcaattatcagaagcttgattggtggaagtattctcctttacaGGCAGGGCATGATTTCCCTATAGTATTTTACCTTGCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA
                         gcttgat  putative branch site (score: 5)
                                         tattctccttt  putative PPT
            tcaattat  TA-rich tract