1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttcatgttttaaaccattgtttgaacggtacaaagtaaaatattttagcttgaaatggttcttcttttgtcttttaatcattgcatgttgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCACAAGGCCTT
species | Glycine max |
transcript | GLYMA18G43160.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTG TAGATACTAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTEST: gi|9205414|gb|BE331638.1|BE331638
genomic: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGtgagtatggt ... tgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTT
EST: CTTTGGGTCTCATCTGGCTGAGTCTGAAGTTCAGTTGCTTATAGAAGCTG TAGATACTAATGGTAAAGGGA-CACTATACTATGGAGAAEST: gi|192298261|gb|FG991723.1|FG991723
genomic: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGtgagtatggt ... tgacaacaggTAGATACTAATGGTAA-GGGAACACTAGACTATGGAGAA
EST: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTG TAGATACTAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTEST: gi|14259396|gb|BG882304.1|BG882304
genomic: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGtgagtatggt ... tgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTT
EST: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTG TAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTT
genomic: CTTTGGGTCTCAACTGGCTGAGTCTGAAGTTCAGTTGCTTATTGAAGCTGtgagtatggt ... tgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTT
tttagcttgaaatggttcttcttttgtcttttaatcattgcatgttgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCACAAGGCCTT
tgttgac putative branch site (score: 3)
ttttgtcttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcatgttttaaaccattgtttgaacggtacaaagtaaaatattttagcttgaaatggttcttcttttgtcttttaatcattgcatgttgacaacaggTAGATACTAATGGTAAGGGAACACTAGACTATGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCACAAGGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tcatgtt
- - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - aagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -gcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt