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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaatcaaatttctaacgttctaattcaggcataatcaacgtgcaatttttttccctctgactaagcttgcatgaatacagGCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914596|gb|AW396126.1|AW396126
EST:     TAGAAGAAGATGTAAAGCTTCTTGAAGAGGTGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTT
genomic: TAGAAGAAGATGTAAAGCTTCTTGAAGAGGTGTATCCACAAGGGGAAAAGgtcagtaatc ... atgaatacagGCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTT
EST: gi|208166242|gb|GD959134.1|GD959134
EST:     TAGAAGAAGATGTAAAGCTTCTTGAAGAGGTGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTT
genomic: TAGAAGAAGATGTAAAGCTTCTTGAAGAGGTGTATCCACAAGGGGAAAAGgtcagtaatc ... atgaatacagGCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTT
EST: gi|22522977|gb|BU081788.1|BU081788
EST:     TAGAAGAAGATGTAAAGCTTCTTGAAGAGATGTATCCACAAGGGGAAAAG                         GCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTT
genomic: TAGAAGAAGATGTAAAGCTTCTTGAAGAGGTGTATCCACAAGGGGAAAAGgtcagtaatc ... atgaatacagGCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggcataatcaacgtgcaatttttttccctctgactaagcttgcatgaatacagGCTGAGACAACATGGGCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG
                             ctctgac  putative branch site (score: 3)
                  aattttttt  TA-rich tract