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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgagaacttgggagagtgctataaacttttcacacttcccctcatttaacataatattcatattggccaagcaatattttttttaattaattaaaatgttaaactaaagtaatgccttgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGG

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425751|gb|FK387378.1|FK387378
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|207788083|gb|GD760173.1|GD760173
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTG
EST: gi|15001206|gb|BI322020.1|BI322020
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|120530398|gb|EH258531.1|EH258531
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|5126723|gb|AI748459.1|AI748459
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|208041498|gb|GD840344.1|GD840344
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGTATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|6094836|gb|AW119450.1|AW119450
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|208102353|gb|GD897808.1|GD897808
EST:     AAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGGTTCAGCAACTCAGATTGCCATG-TT
genomic: AAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT-GGGTTCAGCAACTCAGATTGCCATGTTT
EST: gi|208068157|gb|GD861891.1|GD861891
EST:     AAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: AAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193512048|gb|FK466796.1|FK466796
EST:     CAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: CAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|26048877|gb|CA785330.1|CA785330
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193462335|gb|FK426834.1|FK426834
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|6913524|gb|AW395054.1|AW395054
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193558285|gb|FK514138.1|FK514138
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193469973|gb|FK437314.1|FK437314
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|207717379|gb|GD699848.1|GD699848
EST:     CAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAAACAAAGCTGG                         ACATTTCATTGGGTGTTGCATT
genomic: CAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAA-CAA-GCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT
EST: gi|193642808|gb|FK592834.1|FK592834
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193715677|gb|FK655868.1|FK655868
EST:     TGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCGACTCAGATTGCCATGTTTG
genomic: TGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|193448992|gb|FK414263.1|FK414263
EST:     TCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
genomic: TCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|6952300|gb|AW424368.1|AW424368
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGAGTGTTGCATTGAGTTCAGCAACTCAGATTGCCATGTATG
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: gi|208206484|gb|GE007931.1|GE007931
EST:     TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG                         ACATTTCATTGGGTGTTGCATT
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattttttttaattaattaaaatgttaaactaaagtaatgccttgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGG
     tttttttaattaatta  TA-rich tract