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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcattttgtttcctctcattttacaaaagaaaatatcatccatttatacatgtattttgacaactgacatttctaacaaaactaacaaattaacatttatcaataaaaaaaatacattttgaccaacaaatttattagcagAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG

Basic information

species Glycine max
transcript GLYMA18G42940.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330011|gb|FK020827.1|FK020827
EST:     GAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAG                         AGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACT
genomic: GAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGgttggcattt ... ttattagcagAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACT
EST: gi|51335245|gb|CO979111.1|CO979111
EST:     GAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAG                         AGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACT
genomic: GAGTGACAAACTTCATAAACCCCAAGGATGAAGAGAAGCCAGTATACGAGgttggcattt ... ttattagcagAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattaacatttatcaataaaaaaaatacattttgaccaacaaatttattagcagAGAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG
               aataaaaaaaatacat  TA-rich tract