1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...acatttgtagacactacaataattatctttctttaatatatatatatatatatatatatatatatatatatatatatattttgcgttttttcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTGAATTCAGACATGAAACCTCTCAGCCAACTGCTGGTATTATTTCAAATGT
species | Glycine max |
transcript | GLYMA18G42790.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGTGAAGGAATCAATGGTGCAGAAGTGGAACGAAGGTTAAGCCAACCTG ATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTGEST: gi|9903165|gb|BE612133.1|BE612133
genomic: CAGTGAAGGAATCAATGGTGCAGAAGTGGAACGAAGGTTAAGCCAACCTGtaagtttcct ... tcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTG
EST: CAGTGAAGGAATCAATGGTGCAGAAGTGGAACGAAGGTTAAGCCAACCTG ATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTGEST: gi|298196241|gb|HO044632.1|HO044632
genomic: CAGTGAAGGAATCAATGGTGCAGAAGTGGAACGAAGGTTAAGCCAACCTGtaagtttcct ... tcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTG
EST: GCAGAAGTGGAACGAGGGTTAAGCCAACCTG ATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTG
genomic: GCAGAAGTGGAACGAAGGTTAAGCCAACCTGtaagtttcct ... tcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTG
atatatatatatatatatatatatatatatatattttgcgttttttcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTGAATTCAGACATGAAACCTCTCAGCCAACTGCTGGTATTATTTCAAATGT
tattttgcgttttttc CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttgtagacactacaataattatctttctttaatatatatatatatatatatatatatatatatatatatatatattttgcgttttttcttttcaggATGATAAATTTTCGGTTGATTTAGTCACCCGACCCATGACAAACAGTGTTGAATTCAGACATGAAACCTCTCAGCCAACTGCTGGTATTATTTCAAATGT
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