1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgttaaataattgaagaaaaagaaaggaaacatttgagtatggatgaaaacagagaaattctaactaactacaaatattgaattgggtgtgcatgcagTTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAGGTAATTGGGATGCATGACACAAAAAGCATTTGCATAAGGGCACTAGCAA
species | Glycine max |
transcript | GLYMA18G42640.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCATGCTCATTCACCAG TTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAGEST: gi|298163912|gb|HO013557.1|HO013557
genomic: CTCATGCTCATTCACCAGgtaaattttt ... gtgcatgcagTTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAG
EST: CCAAAAATCGATTTCGTGATGCTGCTGTAATCCTCATGCTCATTCACCAG TTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAG
genomic: CCAAAAATCGATTTCGTGATGCTGCTGTAATCCTCATGCTCATTCACCAGgtaaattttt ... gtgcatgcagTTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAG
atgaaaacagagaaattctaactaactacaaatattgaattgggtgtgcatgcagTTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAGGTAATTGGGATGCATGACACAAAAAGCATTTGCATAAGGGCACTAGCAA
aactaac putative branch site (score: 1)
tacaaatattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttaaataattgaagaaaaagaaaggaaacatttgagtatggatgaaaacagagaaattctaactaactacaaatattgaattgggtgtgcatgcagTTCATCACATTCGGTTTTGCTAGTACTCCACTGTACTTTGTCTGGGAGAAGGTAATTGGGATGCATGACACAAAAAGCATTTGCATAAGGGCACTAGCAA
- - - - - - - -aagaaaa
- - - - - - - - - - - - aaaggaaa
- - - - - - - - - - - - - - - - - - - - - tggatga