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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtatgactactttctcttgccatcaaatgttcactcgtaacctactatttcttgctcagtatgtggagttgtgcacttttaatttaataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGCCTAAGATACTGATGACTGGAAAATGGAACGAGGCAATGAATTATCAACT

Basic information

species Glycine max
transcript GLYMA18G39880.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39880.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 3'ss of exon 7
ggtatgactactttctcttgccatcaaatgttcactcgtaacctact-atttcttgctcagtatgtggagttgtgcacttttaatttaataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGCCTAAGATACTGATGACTGGAAAATGGAACGAGGCAATGAATTATCAACT-
                                           |  | | || |   ||||||| ||   |||      | || ||| |  || |||  |    |  | |  |  | |||||  |   |     |||||      |||||||||||| | |||||||||||||||| ||| |||||| ||||||| || || || ||  |||| ||||| |||||||| ||| |||||||||||||||  
-------------------------------------------tgttgacttttctttcagtatctg---ttgcctgtatatagtttcaatatatatatatatatattctacttaagcttatgtatgcattggtatttta----ctgcagAGCTGGTCGTTATGAAGTGGATGGATATGTATATAATGCTGCTGAGGAACCCAAAATTTTGATAACTGGGAAATGGAATGAGTCAATGAATTATCAACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346588|gb|GR856310.1|GR856310
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAG-
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAA-CCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
EST: gi|7686507|gb|AW757155.1|AW757155
EST:     GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
genomic: GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
EST: gi|254346587|gb|GR856309.1|GR856309
EST:     GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
genomic: GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGCCTAAGATACTGATGACTGGAAAATGGAACGAGGCAATGAATTATCAACT
                                         tttttgc  CT-rich tract
               ttatatatcttatcaa  TA-rich tract