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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagctactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC

Basic information

species Glycine max
transcript GLYMA18G10150.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G065012_T03 (Zea mays), 3'ss of exon 8
gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagctactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattg---attgttattcctttctcattt---cagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
| | | ||||||| || || || | | | | || | || || | || | | | | | | ||| || ||| | || || | || ||||| | || || || ||||| || || ||||| |||| |||||||||||||| || |||||||||||||| || |||||| | || |||| |||||||
----------------------------------------------gtaattttcactcctttgttttatctgcagtttaatttgttctacaacaaaggtaaatctgttgtaaagtgt-tgtgtcgctcctttgctggtaatttctgcccccctccccttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATACTCCACGGGGAAAACAACATTCATAAAGCATTTACTAAAAACAAGTTATC

upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 8
gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagc-tactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
|| || | ||||| | | || | ||| || || || || ||| || || || |||| | ||| | | |||| | ||| | | | |||| || ||||| || ||||| ||||||||||| ||||| ||||||||||||| || || ||||||||||| ||||||||| |||||||| | |||||
---------------------------------------gtgagttgggcattgcttattggtgctcctatggcgttatttaa-gttccaaatactattgaattctaaac--------tatattt-gaccattgaacta--gttacttgttttttttcttagACTAACAGTGATTTCGATGCAAAACCTATGGTAATGCTTCTGGGTCAATACTCCACAGGAAAAACAACATTCATTAAGCATTTGCTTAAATCTACTTATC

upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 8
gttagtaagtgattt------tatttatttggtttaattgagaaaacaagacaagctactttattttttgttt-catttgttaattcaataatctaatgac-cattatatataa-agagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
|| || || || |||| ||| ||| || | || || || | || || | | |||||| | | | |||| || ||| || | | || || |||||| | | || |||| ||| | | || || | || ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || || ||||| ||| |||| || || |||||||
gtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttgattctaatgaatgtttgtttgatttaca-tctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcagACAAATAGCGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGAAAAACTACTTTCATTAAACATTTGCTGAAGAGTAGTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
                          tattgat  putative branch site (score: 3)
 ttgttattcctttctc  CT-rich tract
 atatacatttaggtta  TA-rich tract