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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagctactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC

Basic information

species Glycine max
transcript GLYMA18G10150.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G065012_T03 (Zea mays), 3'ss of exon 8
gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagctactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattg---attgttattcctttctcattt---cagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
                                                  |  |   |  ||||||| || ||    || | |  |   |  || |   || ||     | ||  | |   | | | |  |||  ||   |||  |   ||  || | ||    ||||| |  || || || ||||| || || |||||  |||| |||||||||||||| || |||||||||||||| || |||||| | || ||||  |||||||
----------------------------------------------gtaattttcactcctttgttttatctgcagtttaatttgttctacaacaaaggtaaatctgttgtaaagtgt-tgtgtcgctcctttgctggtaatttctgcccccctccccttcaaacagACTAGCAGCGATTTCGATGCGAAGCCAATGGTCATGCTGTTGGGTCAATACTCCACGGGGAAAACAACATTCATAAAGCATTTACTAAAAACAAGTTATC

upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 8
gttagtaagtgattttatttatttggtttaattgagaaaacaagacaagc-tactttattttttgtttcatttgttaattcaataatctaatgaccattatatataaagagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
                                          ||    || |   |||||  |  |   ||    | ||| ||   || ||  || |||  ||   ||          || |||| |   ||| |   |  |||| |  ||| |  | | |||| || ||||| || ||||| |||||||||||  ||||| ||||||||||||| || || ||||||||||| ||||||||| ||||||||   | |||||
---------------------------------------gtgagttgggcattgcttattggtgctcctatggcgttatttaa-gttccaaatactattgaattctaaac--------tatattt-gaccattgaacta--gttacttgttttttttcttagACTAACAGTGATTTCGATGCAAAACCTATGGTAATGCTTCTGGGTCAATACTCCACAGGAAAAACAACATTCATTAAGCATTTGCTTAAATCTACTTATC

upper sequence: GLYMA18G10150.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 8
gttagtaagtgattt------tatttatttggtttaattgagaaaacaagacaagctactttattttttgttt-catttgttaattcaataatctaatgac-cattatatataa-agagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
|| ||  ||  ||          |||| ||| ||| ||    | ||  ||  ||   |  ||  || |  |     ||||||   |  | | |||| ||    ||| || |  |  || || |||||| | | || ||||   ||| |  | ||   ||  |  || ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || || ||||| ||| |||| || || |||||||
gtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttgattctaatgaatgtttgtttgatttaca-tctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcagACAAATAGCGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGAAAAACTACTTTCATTAAACATTTGCTGAAGAGTAGTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagaaagatatacatttaggttatttattgattgttattcctttctcatttcagACAAATAGTGACTTTGATGCCAAACCTATGGTTTTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAGCATATGCTTAAAAGCAGTTATC
                          tattgat  putative branch site (score: 3)
                                ttgttattcctttctc  CT-rich tract
        atatacatttaggtta  TA-rich tract