1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgaggtttttagttcgataaacaagttaatatgaaggtctgcataaagtttatctttttatctgtacagcttgaactcatatcataaatgtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG
species | Glycine max |
transcript | GLYMA18G07540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG GATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAAEST: gi|6482105|gb|AW201376.1|AW201376
genomic: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatt ... gtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
EST: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG GATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
genomic: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatt ... gtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
aaagtttatctttttatctgtacagcttgaactcatatcataaatgtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG
atatcataaatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgaggtttttagttcgataaacaagttaatatgaaggtctgcataaagtttatctttttatctgtacagcttgaactcatatcataaatgtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG
- - - - - - - - gataaac
- - - - - - - - - - - - - - - tatgaag
- - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatca