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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaaattgtagataatgtttttaggaatggttattttccattttctttgttccaccacccctcacagttgtagtgtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccagGACTATTGCTTACACTAATCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATA

Basic information

species Glycine max
transcript GLYMA18G07480.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07480.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g63270.1 (Oryza sativa), 3'ss of exon 7
--------------gtcagtaaattgtagataatgtttttaggaatggttattttccatt-ttctttgttccaccacccctcacagttgtagtgtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccagGACTATTGCTTACACTAATCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATA
              | ||    |   || |   || | |      |  |  |||||||   || ||| ||   || |   |||   |   |    | || | || || |  | |||| |   |  |    ||  |     |   |||| || ||||| ||||| ||||| ||||| || |||||||| || ||||||||||| ||   ||||||| ||||| | |||||||| || |||||||| || 
gtgagctctaatatgacaagtgacaatataatttgatctcttttcttatctttttccaccattgtttatttttccgcttttcattttaacaag--agtaattcaacttaaaagcttgacctaatcaataaattatttgaatggtccagAACAATTGCCTACACCAATCACACTGTTCTTCCTGAAGCCCTTGAGAAATGGTCGCAGATTGTAATGAGGAAATTACTTCCACGACACATGGAAATTATC

upper sequence: GLYMA18G07480.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G46970.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtaaattgtagataatgtttttaggaatggttattttccattttctttgttccaccacccctcacagttgtagtgtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccagGACTATTGCTTACACTAATCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATA
                                           |   | ||| | |    |||  |||      || |     |  |    |    |  || |   |   || |  |  ||    |||  ||||||  |||||||||| ||||| |||||||| ||||||||  | ||||||||||| ||| || | |||||||| || ||||| || ||||||||||| |||
-----------------------------------------gtaaaatatttatgcatgaacctttca-----atatttcccaacaaagttttcacacttttctgttgggacttatttatatggttta--cagGACCGTTGCTTACACCAATCACACTGTCCTTCCTGAAGCGTTGGAGAAATGGTCACAATCTTTGATGTGGAAGCTTCTTCCTCGTCATATGGAAATAATA

upper sequence: GLYMA18G07480.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g06020.t01 (Vitis vinifera), 3'ss of exon 7
gtcagtaaattgtagataatgtttttaggaatggttattttccattttctttgttccaccacccctcacagttgtagtgtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccagGACTATTGCTTACACTAATCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATA
    ||  | | |   |  |||||    |||   |   |      |||    |    |||  |  |  | ||||   | | ||||   |   ||  |  ||    | |||| ||           | || ||| || ||||| || || ||||| |||||||| ||||||||||| ||||||||||| |||  |||||||||||| || ||||||||||||||||||||||||
----gttcactatgttttttgtttgatagaacactcgctcatgggttttccagcatgaccttctttgtctgttgctttttcttatgttaataca--actttatggcaaaaatat-----------tgaatcagAACAATTGCCTATACAAATCACACTGTCCTTCCTGAAGCACTTGAGAAATGGTCACAAGTTGTAATGTGGAAGCTTCTTCCACGCCATATGGAAATCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattattacacctcattaacttgccactaaaacatgatgctacatcttaaccagGACTATTGCTTACACTAATCATACTGTCCTCCCTGAAGCACTAGAGAAATGGTCTCAACCTGTAATGTGGAAACTGCTTCCACGCCATATGGAAATCATA
                         cactaaa  putative branch site (score: 2)
               attaactt  TA-rich tract