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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atataataatttctcctattctacaatcaataatccttctatggtcctgaattgttcctttcttttttcattttcttattctttttgttgtcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCTGGGCCATTGCCACTTCATCTAATAAAGTACTTGCTCCACAGCATA

Basic information

species Glycine max
transcript GLYMA18G06950.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208135902|gb|GD935823.1|GD935823
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|193411735|gb|FK378982.1|FK378982
EST:     GTTATCCATCACCTTTTCC-TCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAG
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAG
EST: gi|208298438|gb|GE096215.1|GE096215
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|193587612|gb|FK542647.1|FK542647
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTA
EST: gi|208170209|gb|GD968800.1|GD968800
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTGTCATTTAATC-AAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|6913226|gb|AW394756.1|AW394756
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|208087287|gb|GD886453.1|GD886453
EST:     CCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: CCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|208200572|gb|GD996937.1|GD996937
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|208317446|gb|GE114855.1|GE114855
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCGGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|193395712|gb|FK362251.1|FK362251
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: gi|208327605|gb|GE124129.1|GE124129
EST:     GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC                         GACTAAAGCAGCAAAGGCAGTGCTAG
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgaattgttcctttcttttttcattttcttattctttttgttgtcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCTGGGCCATTGCCACTTCATCTAATAAAGTACTTGCTCCACAGCATA
         ttcctttcttttttca  CT-rich tract
             tttcttttttcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atataataatttctcctattctacaatcaataatccttctatggtcctgaattgttcctttcttttttcattttcttattctttttgttgtcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCTGGGCCATTGCCACTTCATCTAATAAAGTACTTGCTCCACAGCATA

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