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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaattgctgaacattatacaaactggcatgtgaattgcagGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATA

Basic information

species Glycine max
transcript GLYMA18G05840.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05840.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaattgctgaacattatacaaactggcatgtgaattg-----cagGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATA
           ||    ||  | ||    | || || |  | ||||  || || || |  |    |   |    ||||   | || ||||      |||||||||||||||| |||   ||||| |||||  ||||||||  ||| |||||||||| ||| |  || ||||| || |||||||||| |||||| ||||
-----------gtaaatttcccattcctatggtgatgtcttttcttgtccttg-aaatattttgtagagttatgactgatgtctgcattggtatatagGCATATTTTCCTCCGATTAGTCAATCCGAAGGCATTCCTTTGAAAATCCAAGATGTGAGGGGTAGGGAGTGGACGTTCCAGTTCAGATATTGGCCCAATA

upper sequence: GLYMA18G05840.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------gtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaattgctgaacat-tatacaaactggcatgtgaattgcagGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATA
                            ||  ||||    |||  | |  | |  | ||| || |  | | |  |   | |  || ||   ||| | || ||||||  | || |||  ||||||||||||||||||||||| ||||| |||||  |||| ||| |  | || ||||  |||||||  || ||||||||||| |||||||||||||| ||||
gtaagttttcaaaagtagtcatcctcaatacctttgtttcttg--tatgctagcttgtgttatttattttgtggaggtttttcttccttttcatatgtataaactg-taagtcaat-acagGCATATTTTCCTCCTATTTCTCAATCAGAAGGCCTTCCATTGAGGGTTCAGGATGCAAAGGGGACAGAGTGGACATTTCAATTCAGATTTTGGCCCAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctcttcaccctgtaattgctgaacattatacaaactggcatgtgaattgcagGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATA
                           attatacaaa  TA-rich tract