1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cactgttacaatcagtttagtgcatatacaatctgtttgagcatctccacaatatatatgttttgccttctaagtattcaagctttatactcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG
species | Glycine max |
transcript | GLYMA18G04360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAATGCTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAG- ATTCAGTCTGAAG-ACATGGCCGGGAGGCCTGTAG-CTTCTCCATGCAGCTEST: gi|22929873|gb|BU547012.1|BU547012
genomic: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGtaattatata ... tcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCT
EST: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGG ATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTEST: gi|213600856|gb|DB958434.1|DB958434
genomic: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGtaattatata ... tcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCT
EST: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGG ATTCAGTCTGAAGGAEST: gi|22541669|gb|BU091512.1|BU091512
genomic: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGtaattatata ... tcattataggATTCAGTCTGAAGGA
EST: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGG ATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCT
genomic: CAATGTTGACTCCCAACCAGTTTGAAGCAGAACTACTGACAGGCTTTAGGtaattatata ... tcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCT
tccacaatatatatgttttgccttctaagtattcaagctttatactcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG
aatatatatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgttacaatcagtttagtgcatatacaatctgtttgagcatctccacaatatatatgttttgccttctaagtattcaagctttatactcattataggATTCAGTCTGAAGGACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- ctgttac
- - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - ctccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcaagc