Sequence
atgc intronic sequence ATGC exonic sequence...tatcatgatgtagaagaaagtaatttattctgactttttgagaaaatggtttatatttggtattgtgatgattctcgtagcaggagtttctcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGATATTCCCATGTCATGCACATAAGTTCAACG
Basic information
species | Glycine max |
transcript | GLYMA18G03270.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03270.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g61120.1 (Oryza sativa), 3'ss of exon 8
------tatcatgatgtagaagaaagtaatttattctgactttttgagaaaatggtttatat--ttggtattgtgatgattctcgtagcaggagtttctcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGATATTCCCATGTCATGCACATAAGTTCAACG
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gttgagcatcctgttgctattataattggcttcattaca-tttctgagttctgacttcatctagtctgatctgtgataaactt--ttgc-----cttttttttttcagGTGTCCAAACCAGGTTCAGTAAAGGTGGAGAAACTGATGAACGTTGAACGATATTCACATGTCATGCACATTAGCTCAACA
upper sequence: GLYMA18G03270.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G003109_T01 (Zea mays), 3'ss of exon 8
----tatcatgatgtagaagaaagtaatttattctgactttttgagaaaatggtttatatttggtattgtg-atgattctcgtagcaggagtttctcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGATATTCCCATGTCATGCACATAAGTTCAACG
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gtcgcactatagttcagaaaaaagtcggtt-ttatgttttgtttgttattacacatctatcttgtttcatctatgat----ataataaacttgtcgtgtgtacagGTCTCCAAACCAGGTTCAGTAAAGGTGGAGAAATTGATGAATATTGAACGATATTCTCATGTCATGCACATCAGCTCAACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193338190|gb|FK304293.1|FK304293EST: ATTTGGGACGCAATGATGTTGGAAAG GTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGA
genomic: ATTTGGGACGCAATGATGTTGGAAAGgtttgttata ... tcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggtttatatttggtattgtgatgattctcgtagcaggagtttctcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGATATTCCCATGTCATGCACATAAGTTCAACG
tttctcttttgt CT-rich tract
ttatatttggtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatcatgatgtagaagaaagtaatttattctgactttttgagaaaatggtttatatttggtattgtgatgattctcgtagcaggagtttctcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGATATTCCCATGTCATGCACATAAGTTCAACG
- -catgatg
- - - - - -agaagaaa
- - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg