Sequence
atgc intronic sequence ATGC exonic sequencegtactgccaactaaaacataaacaatttcttttttagattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
Basic information
species | Glycine max |
transcript | GLYMA18G02850.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G02850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G56050.2 (Arabidopsis thaliana), 3'ss of exon 5
gtactgccaactaaaacataaacaatttcttttttagattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
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gtatttccggtcaaccagttttct-tatattttaaggattttgatttctatcaccttatcgattatggtttcga-------tgatttcagATCGAAATGTTATCCAAGATAAACCACAAGAATTTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATG
upper sequence: GLYMA18G02850.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G40270.1 (Arabidopsis thaliana), 3'ss of exon 4
gtactgccaactaaaacataaacaatttcttttttagattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
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----------gtattgttttccccatttttgttttcttataacaacaa--catatagtcgacttagcgcgttctgttttcacgatttcagATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATG
upper sequence: GLYMA18G02850.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 3'ss of exon 7
gtactgccaactaaaacataaacaatttcttttttagattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
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---gtacttgagagattacatccactaaactttgt-ggttttgattcatcttggtagtc---cttacattttctttggttgtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
aactaac putative branch site (score: 1)
taactaacattttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactgccaactaaaacataaacaatttcttttttagattttcaactaggctgctattgtaactaacattttaagcaattatggtttcagATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTGGTTTTTGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG