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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgctgcctttatttctattgtgcatattgtgattaaattttttatgatggaaaaaaaattccatttactgtctaactttttttttctttttaatgtttaacattgttggatgtgaatgtctggccgcagGCCTCAAAGTCGGACAAAAATTCTA

Basic information

species Glycine max
transcript GLYMA18G00920.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312177|gb|FK005662.1|FK005662
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|254326113|gb|GR840705.1|GR840705
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|208241879|gb|GE041073.1|GE041073
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|31458741|gb|CD400769.1|CD400769
EST:     TGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACTAAAATTCTA
genomic: TGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|58022050|gb|CX708791.1|CX708791
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|4289526|gb|AI441488.1|AI441488
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
EST: gi|192312176|gb|FK005661.1|FK005661
EST:     GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAG                         GCCTCAAAGTCGGACAAAAATTCTA
genomic: GAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctgctgcc ... ctggccgcagGCCTCAAAGTCGGACAAAAATTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttttttttctttttaatgtttaacattgttggatgtgaatgtctggccgcagGCCTCAAAGTCGGACAAAAATTCTA
     ttttttctttttaatg  TA-rich tract