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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttgagtgtcaatttgccagatgatttgacgcgtttgacttgattattgagcagttgatcagaaaaatctcacatttctggttctaattccatgtcagGTTAATCCCCAATTCTATGCATTTAGGTGGATTATTCTCCTATTGACACAGGAATTTAATTTTGCCGACATCCTTCATATTTGGGACGTCATTTTAAGTG

Basic information

species Glycine max
transcript GLYMA18G00430.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00430.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 3'ss of exon 7
atcttgagtgtcaatttgccagatgatttgacgcgtttgacttg-attattga-gcagttgatcagaaaaa-tctcacatttctggttct----aattcca--tgtcagGTTAATCCCCAATTCTATGCATTTAGGTGGATTATTCTCCTATTGACACAGGAATTTAATTTTGCCGACATCCTTCATATTTGGGACGTCATTTTAAGTG
            ||  || |||||| || |||     ||| ||  || |||    |  ||| |  |  ||  ||||| || |||| | ||    | || ||  || ||||| ||||||||||| ||||||||||| ||||| | |||||| ||||| || || || |||||||| |||| |||||| |||||||||    || ||||||
---------cataagctggcagatgtttggacttcagtgaattacatcatttttacccttggttggtcaatctctcagatgtctgatgctctatatttgcaaatggcagGTCAATCCCCAATTTTATGCATTTAGATGGATAACTCTCCTCTTGACTCAAGAGTTCAATTTTGCGGACAGCCTTCACATTTGGGACACACTTCTAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgagcagttgatcagaaaaatctcacatttctggttctaattccatgtcagGTTAATCCCCAATTCTATGCATTTAGGTGGATTATTCTCCTATTGACACAGGAATTTAATTTTGCCGACATCCTTCATATTTGGGACGTCATTTTAAGTG
                                      ttctaat  putative branch site (score: 2)
                 agaaaaat  TA-rich tract