1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctggatattgtgatattctctctaaaaagaattgttctagctaattctaatggtgggttaacaactgttaacaacaatgctgtctgaatggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAAT
species | Glycine max |
transcript | GLYMA17G37220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTEST: gi|24205537|gb|BU964790.1|BU964790
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTEST: gi|58014288|gb|CX701030.1|CX701030
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTEST: gi|16279081|gb|BI943248.1|BI943248
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTEST: gi|20812590|gb|BQ297068.1|BQ297068
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCTTTCTGATGTACTGGATCCTGCTCTEST: gi|192308350|gb|FK001336.1|FK001336
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
EST: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAA GGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
genomic: ACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAggtatatctt ... ggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCT
ttctaatggtgggttaacaactgttaacaacaatgctgtctgaatggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAAT
tgttaac putative branch site (score: 2)
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctggatattgtgatattctctctaaaaagaattgttctagctaattctaatggtgggttaacaactgttaacaacaatgctgtctgaatggatgttgtaGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTAGATAGAAAAATAGAAATTCCATTGCCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctgaa