Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactatgcattaatttttgttaatggtgttatttacttatttatcaatcagcttgtattgttatttggaaattctgactatctgcgtggtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG

Basic information

species Glycine max
transcript GLYMA17G37150.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------gtaactatgcattaatttttgttaatggtgttatttacttatttatcaatcagcttgtattgttatttggaaattctgactatctgcgtggtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG
                        |   |   ||| | |      || || | |   ||  ||  ||  || | ||     | | | || | |   | || || || |  |    || || ||| ||||||| || ||||| ||||| | |||||| |||  ||||| ||||||||||||||| ||||||||||| || ||| | || ||  | || ||||||
gttgagacatctcaatcctcttgtttggttcacatgagtccaaaata-tgatatagcttgtttggttcaca-tgagtccaaaatatgatatagct-tcctaaccatttttggaactttttcagCCAGCTGCCAGATTTTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGCCCCTGGAATGACCCTGAGATATTAAAG

upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaactatgcattaattttt-gttaatggtgttatttacttatttatcaatcagcttgtattgttatttggaaattctgactatctgcgtggtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG
        | || | ||||  ||   |     | |||  ||  |||||| |        | | | |||   ||| ||||||||| |  |    ||||| ||| ||||||| || ||| | ||||||| ||||||||||  |||||| || ||||||||||| |||||||||||||| ||| | ||  |  | ||  |||||
--------gtatgagttttgagtccttaactgttttttttttcttatca-tatctccagaatataatt--aaaactctgactatatttggaacttgttcagCCAGCTGCCAGATTTTTTCGGTGGTACTTGCACTTGTGCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTAAAG

upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 7
gtaactatgcattaatttttgttaatggtgttatttacttatttatcaatcagcttgtattgttatttggaaattct-gactatctgcgtggtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG
       || |||  ||| |||  || |   |    ||||||||  || |||       |   | |||| || |||| || ||| |  ||| |||  ||||  || |||| |||||||| |||||||| || |  |||  |||||| || |||||| ||| ||||||||| ||||| ||| | ||||||||||| ||||||
------gtgaattcttttctgt--attggactcaccacttattttgcattcaagcctactaactttttgaaatttcttgaatatattggtgattt-cttagTGAGTTGCCCGAATTTCTCGGTGGTAGCTGTATCTGTGCAGATCAGGGAGGTTGTTTGAAGTCTGATAAGGGGCCGTGGAAAGATCCAAACATATTAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191151|gb|GD989167.1|GD989167
EST:     GTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAG                         CAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGG
genomic: GTTCTTGGAAACAAGTTCCAGAACAGATTACTAGAAATTATTGATGCAAGgtaactatgc ... gtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatcagcttgtattgttatttggaaattctgactatctgcgtggtttgtttagCAAGCTGCCTGAATTTCTAGGTGGTAGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG
                            ttctgac  putative branch site (score: 2)
                                              tttgttt  putative PPT
         ttgtattgttattt  TA-rich tract