1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacgagtagaaaagctcccaaaaggacttttagccttgtatccaaagagactctaacttcagtcattactatgaactgtgcttgctttaaatgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGCAGGGGATCTTTTTGCAAGTGGATTTTTGTATGGAGTGATCAAAGGTCT
species | Glycine max |
transcript | GLYMA17G37040.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTAGTAACCCTGGGTCCTANNNGATGCATTGCTAAACATGGAAACGAGA TTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGEST: gi|58016921|gb|CX703663.1|CX703663
genomic: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGGtgtgtaaatt ... atgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGG
EST: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGA TTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGEST: gi|57574958|gb|CX547933.1|CX547933
genomic: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGGtgtgtaaatt ... atgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGG
EST: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGA TTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGEST: gi|15203237|gb|BI426005.1|BI426005
genomic: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGGtgtgtaaatt ... atgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGG
EST: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGA TTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGG
genomic: CGTAGTAACCCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGGtgtgtaaatt ... atgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGG
agagactctaacttcagtcattactatgaactgtgcttgctttaaatgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGCAGGGGATCTTTTTGCAAGTGGATTTTTGTATGGAGTGATCAAAGGTCT
ctctaac putative branch site (score: 2)
tttaaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgagtagaaaagctcccaaaaggacttttagccttgtatccaaagagactctaacttcagtcattactatgaactgtgcttgctttaaatgtatcagaTTGCACGGGTCCCGGCCATAGGCGAAGCCAAGGCAATTGATGCAACAGGGGCAGGGGATCTTTTTGCAAGTGGATTTTTGTATGGAGTGATCAAAGGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - gaaaagc
- - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - - - - - -ccaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac