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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgatctttattcttgttcaaattggtttaagtcgtggatttttttggcctccattcgtgtagtttagttacaactaaaaacatgtttgtggtcttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAG

Basic information

species Glycine max
transcript GLYMA17G33690.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G33690.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 3'ss of exon 7
ctgatctttattcttgttcaaattggtttaagtcgtggatttttttggcctccattcgtgtagt-ttagttacaactaaaaacatgtttgtggtc-ttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAG
 || | |  |||  |||     || |  |    | |  |||         ||         ||   || ||| |  ||    ||| ||| ||    |||||||| |||||| |||| ||||| || |||||||||||  | ||||||||||| || |||||||| ||| ||||||||
-tgctttagatttatgtcattctttgccttctccctccattccaaaactttctgcagaatcagcactaatta-atttactggcatttttctgaaaattgcagGAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098639|gb|HO760380.1|HO760380
EST:     TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG                         GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCTAGTGATGGG
genomic: TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGgtgcatttct ... ggtcttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGG
EST: gi|10845528|gb|BF071133.1|BF071133
EST:     TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG                         GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGG
genomic: TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGgtgcatttct ... ggtcttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGG
EST: gi|151409117|gb|EV278925.1|EV278925
EST:     TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG                         GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGG
genomic: TTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGgtgcatttct ... ggtcttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcctccattcgtgtagtttagttacaactaaaaacatgtttgtggtcttgcagGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAG
                           aactaaa  putative branch site (score: 2)
                           aactaaaaa  TA-rich tract