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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatacttcatatctaggctaaattgtgaattgagaatttatcttttaatcatgtcaatcattcaccccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG

Basic information

species Glycine max
transcript GLYMA17G31990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G31990.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G25480.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------gtgagaatacttcatatctaggctaaattgtgaattgagaatttatcttttaatcatgtcaatcattcaccccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                           | | |||     ||   |    |||| |||  ||       | |   ||  |   |    |||||         ||  ||||||| |||||||| ||| |||||||||| |||||||||||||| || ||||| || || ||||| |  || || || || |||   |   ||||  | |
gttgtgttctatgccctcttgtttttcttaaaatgtcctattattcatttaaagtgtctat---atgctcagtcttctactgtaaatatcatctggaatacttgcagGAAACTCAAGAAGCTGAGCTTAAGATGCTAAGGAAGAGTCTGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACCTCAGCTACCTAAAACAG

upper sequence: GLYMA17G31990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g05480.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtgagaatact-tcatatctaggctaaattgtgaattgagaatttatcttttaatcatgtcaatcattcaccccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                         | ||| |  |  |    |  |||| |||| | |  | | ||| |  |||  ||     | |  |||     ||||| ||||||| |||||||| |||||||||||||||||||||||| |||  ||||||||||| || |||||||| || || ||||| ||  | ||| |||| | ||
gttgtactattttatgcctagttccataatgcaattgtggagactctaatttgttagt--aaagtttgttctttt-tctgacaagttcttctattgttttacagGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGG

upper sequence: GLYMA17G31990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g05460.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtgagaatacttcatatctaggctaaattgtgaattgagaatttatcttttaatcatgtcaatcattcaccccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                      ||  ||||  ||  | |  |   | | |  |  |||     | |   ||||  | |  |  | |  |||    || ||||||| || |||||||| ||||||||||||||  |||||||  | |||||||||||||| || |||||||| || ||||| || ||| | ||      || | 
gtgagaacattctgtgtttactgtttgaatggttt-tgttgactttgattcattgatttcagctgtcctttttggtgactttgagc--tcaaatgttctatagGAGACTCAAGAAGCAGAGATTAAGATGCTACGGAAGAGCTTAAATTTTAAAGCAACCCCTATGCCAAGCTTCTACCATGAACCTACACCCAAGGTGGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304103|gb|FG995333.1|FG995333
EST:     GGATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAATCCAAG                         GAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAA
genomic: GGATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAATCCAAGgtgagaatac ... ccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAA
EST: gi|163926997|gb|EH038528.1|EH038528
EST:     GGATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAATCCAAG                         GAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAA
genomic: GGATTCAGGCAAAGGAGGTGGAGAAGAGTAACTTGCAAGCAAAATCCAAGgtgagaatac ... ccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgaattgagaatttatcttttaatcatgtcaatcattcaccccttttatagGAAACCCAAGAAGCCGAGATTAAGATGCTTAGGAAGAGTCTGAATTTTAAAGCAACTCCAATGCCAAGTTTTTACCAGGAGCCTGCTCCTGCTAAGGCGG
                     ttttaat  putative branch site (score: 3)
                                    tcattcacccctttt  putative PPT
      aattgagaatttatct  TA-rich tract