1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgtatactgtttccagttgatgctatttttggaaattgttggaaggatatatacagatagcttcactaacaaaatactgttcatgcttctaacttccagCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCAACCTTCTTTACT
species | Glycine max |
transcript | GLYMA17G29670.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGG CCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCAEST: gi|6719064|gb|AW306711.1|AW306711
genomic: TAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGGgtactatgtt ... taacttccagCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCA
EST: TAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGG CCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCA
genomic: TAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGGgtactatgtt ... taacttccagCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCA
ggatatatacagatagcttcactaacaaaatactgttcatgcttctaacttccagCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCAACCTTCTTTACT
ttctaac putative branch site (score: 1)
tgcttct CT-rich tract
taacaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatactgtttccagttgatgctatttttggaaattgttggaaggatatatacagatagcttcactaacaaaatactgttcatgcttctaacttccagCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCAACCTTCTTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - tgtttcc
- - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - tggaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct