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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC

Basic information

species Glycine max
transcript GLYMA17G26440.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G26440.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtca-atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
                                                       |||||  |||   ||         | |||| ||      | | | |  ||||  ||      || |  |||||| ||    | |||  | ||  | | || |||||||||||| || ||||| |||||||| || |||||||||||  | |||||  |||| ||||| |||||| ||||| |||| |||| | ||     ||| 
-------------------------------------------------------tttacaaattaaatcagaagttgagaatttcta----tgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105990|gb|BI893730.1|BI893730
EST:     CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTC                         GGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC
genomic: CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctg ... atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
                                              tttttcc  CT-rich tract
       aaacaatatagtagtt  TA-rich tract