Sequence
atgc intronic sequence ATGC exonic sequencegtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
Basic information
species | Glycine max |
transcript | GLYMA17G26440.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G26440.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggcctggaatccctttccatgatattatataatgatgactgagtacaatattttactcattgtttcgtgttcattgtatttttagtaaaatgtattatttttatccaaacaatatagtagttattattatggtcttttccgtca-atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
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-------------------------------------------------------tttacaaattaaatcagaagttgagaatttcta----tgtttttgaagtttaaacagttgtcattggggttattttttcattttttatcttcttactctttcagGGATGAATCGCTTCTATGTCAAGGACTGGCACTGAATGATGACTTGCAGCGATTACTAGCCAAACACGAAGCTATTGCTTCAGGAACTCCTGTTCCAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16105990|gb|BI893730.1|BI893730EST: CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTC GGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC
genomic: CAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCgtaaggcctg ... atttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatccaaacaatatagtagttattattatggtcttttccgtcaatttttccagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAAC
tttttcc CT-rich tract
aaacaatatagtagtt TA-rich tract