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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcagatattaagatatgtgctcattttcttcattagcagtgtctgattgcttgagtataagttgctgcttgcttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG

Basic information

species Glycine max
transcript GLYMA17G20610.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
gtacatcagatattaagatatgtgctcattttcttcattagcagtgtctgattgcttgagtataagttgctgcttgcttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG
|||  ||    | || |   | |  |    |  |  ||  |   | |   ||  | |  | | | |   ||  ||  ||| | ||||||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||| |||||| || |||||||| ||||||  |||||| | || |
gtatttc----actaggccttattattgcatcatgaatctgtgatatg-aatctcatctgaaaatgccccttattatttcat-gcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26046047|gb|CA783394.1|CA783394
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|18714643|gb|BM522792.1|BM522792
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|15662107|gb|BI699478.1|BI699478
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|254320505|gb|GR826954.1|GR826954
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|20811762|gb|BQ296240.1|BQ296240
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|254342837|gb|GR858999.1|GR858999
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
EST: gi|120533008|gb|EH261141.1|EH261141
EST:     ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAG                         AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA
genomic: ATCCTTTTGAGGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGgtacatcaga ... ttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcattagcagtgtctgattgcttgagtataagttgctgcttgcttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG
             gtctgat  putative branch site (score: 4)
                                     ctgcttgcttcttt  putative PPT
                            tataagtt  TA-rich tract