1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaccgagtctactgacaagaaaatataggaatttcacttctacacttgctagtcaaaatcatttgtttgaatctcatgtctttggatatttatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCGGCAGACCTGATGGACGAGAAGATAATGGGCAATCAATTTGAAGAGC
species | Glycine max |
transcript | GLYMA17G20610.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|18714643|gb|BM522792.1|BM522792
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATEST: gi|15662107|gb|BI699478.1|BI699478
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAAT
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|254320505|gb|GR826954.1|GR826954
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|10238046|gb|BE806934.1|BE806934
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: TTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|20811762|gb|BQ296240.1|BQ296240
genomic: TTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|254342837|gb|GR858999.1|GR858999
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCEST: gi|120533008|gb|EH261141.1|EH261141
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
EST: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG AGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
genomic: CAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGgtagtttcta ... tatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTC
ttgctagtcaaaatcatttgtttgaatctcatgtctttggatatttatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCGGCAGACCTGATGGACGAGAAGATAATGGGCAATCAATTTGAAGAGC
aaaatcatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccgagtctactgacaagaaaatataggaatttcacttctacacttgctagtcaaaatcatttgtttgaatctcatgtctttggatatttatgtgacagAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCGGCAGACCTGATGGACGAGAAGATAATGGGCAATCAATTTGAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA