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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatggacgatatatataaaattaaatactttttctattagttcatgtttatgctttaataattacactccacatatataatttatatgtatatgcattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAA

Basic information

species Glycine max
transcript GLYMA17G18640.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561238|gb|CD487076.1|CD487076
EST:     GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGCAG                       
genomic: GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATA-C-C-Ggtaagcaatg ... gcattagc
EST: gi|207714508|gb|GD696953.1|GD696953
EST:     TGAGCTCAATACCG                         AATCCTCAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAACG
genomic: TGAGCTCAATACCGgtaagcaatg ... gcattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATG
EST: gi|16346744|gb|BI972339.1|BI972339
EST:     GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCG                         AATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATG
genomic: GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGgtaagcaatg ... gcattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgctttaataattacactccacatatataatttatatgtatatgcattagcagAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAA
    ctttaat  putative branch site (score: 4)
     tttaataattacactc  TA-rich tract