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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatttgattttgggaacttcatccatttcatgttttgtgcttcatgtgaaattagaaatattattcctctctaattttgtattacatggctagcttctgtggtataggtttcagcaattctttagtgatcattcccttgccatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGAT

Basic information

species Glycine max
transcript GLYMA17G17990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 7
gtaacttatttgattttgggaacttcatccatttcatgttttgtgcttcatgtgaaattagaaatattattcctctctaattttgtattacatggctagcttctgtggtataggtttcagcaattctttagtg-atcattcccttgccatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGAT
|||  |||| | |    | |   | |   |||  |||  ||         ||  ||||| |     |  || ||      |||| | ||  ||  | | ||||      ||  | ||   || ||  |||||| || |     ||   ||  || |||| | ||||||||||||||| || ||||||||  ||||||||||||||||    || ||||||||||||||||| || ||| ||||| ||||||||| | | ||  |
gtattttatattacaccgag---tcctcacatgccatccttctcatcatgtgaaaaattgg-----tcttttcttatatgttttatgttgaattaccaacttc------atctgcttgtaca-tttattagtgcattaggtgattaatataatt-tttgaacagGTATCATTGTCCGGAATACTCTTGTGATGTATGATCGTGAGCACTTGAAGATTGGTTTCTGGAAAACTAATTGTTCTGAGATATGGGAAATACTTCACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataggtttcagcaattctttagtgatcattcccttgccatttttgtttgcatagGTATCATTGTCCGAAACACTCTTGTAGTGTATGATCGTGAGCAGACAAAAATTGGTTTCTGGAAAACAAACTGTGCTGAGTTATGGGAAAGATTACAGAT
                                        tttttgttt  CT-rich tract
                                       atttttgttt  TA-rich tract