Sequence
atgc intronic sequence ATGC exonic sequence...tcctttttatatttgagagcggaggcaggtaatagctttctaagcttcatatttatattaaattataaataattgttataatcgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA
Basic information
species | Glycine max |
transcript | GLYMA17G14820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G14820.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 5
----------tcctttttatatttgagagcgga-----ggcaggtaatagctttctaagcttc--atatttatatt----------aaattataaataattgttataatcgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA
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gtgtgtgctgctgctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCACCAACATTCATGCAAACTCA
upper sequence: GLYMA17G14820.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv02s0154g00240.t01 (Vitis vinifera), 3'ss of exon 7
--tcctttttatatttgagagcggaggcaggtaatagctttctaagcttcatatttatatt---aaattataaataattgttataat-cgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA
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gtgtgtgctgctgcttgattttgcttgtgcgttttcattttttggatacctgttttttaaggggaaaaaaaaaataaaatctaaaatgtgtttatattgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCACCATGGTACAATGCACATACAAGGTAATCGCCAACATTCATGCAAACTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6746936|gb|AW317392.1|AW317392EST: GAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGCAAG GTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCAT
genomic: GAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGCAAGgtataaatcg ... tttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatatttatattaaattataaataattgttataatcgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA
tcgtttttgtttctcc CT-rich tract
atttatattaaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctttttatatttgagagcggaggcaggtaatagctttctaagcttcatatttatattaaattataaataattgttataatcgtttttgtttctcctagGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACGTCCGTGGTAATCGCCAATATTCGTGCAGACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - gcggagg
- - - - - - - - - - - - - - - - - - - - - agcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaataa