1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atacaacatcttatataagttgactttatttaggaaatatcaactataatgtgtttcttttgttgtcagtaactaaatacttgttcatgttgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTG
species | Glycine max |
transcript | GLYMA17G09080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAG GTTCAAGGGAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGAGGEST: gi|19348689|gb|BM893221.1|BM893221
genomic: TGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGgtataacagc ... tgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGG
EST: TGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAG GTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGEST: gi|6566642|gb|AW234283.1|AW234283
genomic: TGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGgtataacagc ... tgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGG
EST: CCTATGTTCAG GTTCAAGGGAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGAGG
genomic: CCTATGTTCAGgtataacagc ... tgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGG
ataatgtgtttcttttgttgtcagtaactaaatacttgttcatgttgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTG
aactaaa putative branch site (score: 2)
ttgtttt putative PPT
taactaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaacatcttatataagttgactttatttaggaaatatcaactataatgtgtttcttttgttgtcagtaactaaatacttgttcatgttgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTG
- -caacatc
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