1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attctttatggattatataccttgtagcagttttttatcttttaattttgtgttacaatttttcttcaagtgtagaatctgactgatgtttttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCATTTGGACCATCAAAGCAGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT
species | Glycine max |
transcript | GLYMA17G07800.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG TCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCAEST: gi|192295874|gb|FG990898.1|FG990898
genomic: CCGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... tttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCA
EST: CCGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAG TCATATAGCTTTAGAAGGGG-ACATATCCGTCTACTATATTTTCTCTTTCA
genomic: CCGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGgtgatgaatg ... tttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCA
ttttgtgttacaatttttcttcaagtgtagaatctgactgatgtttttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCATTTGGACCATCAAAGCAGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT
gactgat putative branch site (score: 3)
tgtttttccc CT-rich tract
ttacaatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctttatggattatataccttgtagcagttttttatcttttaattttgtgttacaatttttcttcaagtgtagaatctgactgatgtttttcccgcagTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTCTTTCATTTGGACCATCAAAGCAGCTTCCAGATATTCTTGCAGCCTCAAGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - -ccttgta
- - - - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatg