1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctgttctacatttccatctataattcttttttgtgtttatgatcataagtatgcactatgtatcatgtgatttaatactttcaaattgttatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTGTAAAGAGTTTCGAAGGTAAAGGTAAAATCGGTGATGGTTTGATGCCTA
species | Glycine max |
transcript | GLYMA17G06740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAG GAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTEST: gi|15815420|gb|BI787695.1|BI787695
genomic: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAGgtaatcagac ... tatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGT
EST: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAG GAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTEST: gi|7691275|gb|AW759469.1|AW759469
genomic: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAGgtaatcagac ... tatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGT
EST: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAG GAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTEST: gi|15814581|gb|BI786856.1|BI786856
genomic: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAGgtaatcagac ... tatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGT
EST: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAG GAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGT
genomic: TTCCTGTTGGCCTTCCTGGGATTCTCATCATAGATGTCAGCAATTCAAAGgtaatcagac ... tatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGT
ataagtatgcactatgtatcatgtgatttaatactttcaaattgttatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTGTAAAGAGTTTCGAAGGTAAAGGTAAAATCGGTGATGGTTTGATGCCTA
atttaat putative branch site (score: 4)
ttatttttc putative PPT
tgatttaatactttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgttctacatttccatctataattcttttttgtgtttatgatcataagtatgcactatgtatcatgtgatttaatactttcaaattgttatttttcagGAACTGATAGATTATTATAATATCACTACACCAAGAGACTGGACTGGGCGTGTAAAGAGTTTCGAAGGTAAAGGTAAAATCGGTGATGGTTTGATGCCTA
- - - ctacatt
- - - - - - - ccatcta
- - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg