1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgtaaatcttgcttatgtacacatacaatgtagaatattgtccttctgatgacttgtcagctcaggaattatatttgattgaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTTACTTCTCGAATGCAGGATCTCCTCTTGCAACCTTATAAAAATTT
species | Glycine max |
transcript | GLYMA17G06020.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATG GCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTEST: gi|58024620|gb|CX711361.1|CX711361
genomic: CATGTCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCT
EST: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATG GCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTEST: gi|23052983|gb|BU577474.1|BU577474
genomic: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCT
EST: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATG GCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTEST: gi|58017683|gb|CX704425.1|CX704425
genomic: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCT
EST: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATG GCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTEST: gi|58023602|gb|CX710343.1|CX710343
genomic: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCT
EST: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATG GCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTEST: gi|192334427|gb|FK024442.1|FK024442
genomic: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCT
EST: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAG-AATTAATG GCACATCCTTTTGTCAACATGTATGATG
genomic: TCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGgtatgtgtaa ... gaaactccagGCACATCCTTTTGTCAACATGTATGATG
tattgtccttctgatgacttgtcagctcaggaattatatttgattgaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTTACTTCTCGAATGCAGGATCTCCTCTTGCAACCTTATAAAAATTT
aattatatttgattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtaaatcttgcttatgtacacatacaatgtagaatattgtccttctgatgacttgtcagctcaggaattatatttgattgaaactccagGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTTACTTCTCGAATGCAGGATCTCCTCTTGCAACCTTATAAAAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC