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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatttccttgaactataaaagctgactttttaatatttggtctgtactaactgcaacatattggttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC

Basic information

species Glycine max
transcript GLYMA17G04070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 7
--gtatgcaatttccttgaactataaaagctgactttttaatatttggtctgtactaactgcaacatattggttga--gcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
      || || ||||       |      |   |||||     |       |   || |  ||||||||  | |    ||||||||||||||||| |||||| | ||  | |||   || || || || ||||||||||||||| |||||||||||||||| ||||||||||| || ||||
gtaagagctatgtcctcccggcttttttctta--tttttggctgtcacctacttgaaattctaacatattcttggtctacagATGATGTGGCGGCTAAATTTCCTGGTCATATTCTCCTGCATCGTCCTCAACAACAGTTACATGCTATACTACATCTGCCCAATGCACACTCTGTTTACTC

upper sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 7
------gtatgcaatttccttgaactataaaagctgactttttaatatt-tggtctg-tactaactgcaacatattggttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
      |     || |  ||| |  |  |      || ||      ||  |  |||| | ||||  | ||  | || ||||| |||||||||||||||||||||||||| ||| ||||  | ||| |||| ||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||
gtaactgcccctaaatctcttaagtttgattcatggagttccatccatgatattctgattctaatagtaagttttttgttgaacagATGATGTGGCGGCTTAATTTCTTGGTGTTGTTTTGCTGTGTTGTCCTTAATAACAGCTATATGCTATACTACATTTGCCCCATGCACACTCTTTTCACTC

upper sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 7
lower sequence: EDP02440 (Chlamydomonas reinhardtii), 3'ss of exon 4
-----------------------------------gtatgcaatttccttgaactataaaagctgactttttaatatttggtctgtactaactgcaacatattggttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
                                    |   ||  || |         |    |   |||     |    |            | |  || ||| |    ||||||||||||||| || || ||| | ||| | ||||  ||  | || || |||||||| |||||| | |||||||||||||||||||||||           
gcgtttgctggcacgcgctgaagccgctgctagacttccacaccttgcactcgtctcatccccacgcttcccgcttcccgacaccccgcggttccctcagATTCGC---GCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGTGGTGCTCAACAACAGCTACATGCTCTACTACATCTGCCCCATGCACACC----------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagctgactttttaatatttggtctgtactaactgcaacatattggttgagcagATGATGTGGCGGCTTAATTTCTTTGTGGTGTTCAGTTGTATTGTACTTAACAACAGTTACATGTTATACTACATCTGCCCCATGCACACTCTTTTCACTC
                           tactaac  putative branch site (score: 0)
     tgactttttaatattt  TA-rich tract