Sequence
atgc intronic sequence ATGC exonic sequence...tcacagtcccctgctcttgtcatctcctatgcagctggaatggcacttttctgctagtgtattttatgtgcatcctttttcactggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
Basic information
species | Glycine max |
transcript | GLYMA17G03570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 7
tcacagtcccctgctcttgtcatctcctatgcagctggaatggcacttttctgctagtgtattttatgtgcatcctttttc-actggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
| | | | || | || ||| | | | || | | | | | |||| | | ||||| || || | ||||||| | || || ||||| ||||||| || || | ||| || || |||||||||||| ||||||||||||||||||| ||||| || ||||| || ||
-tgtaagctcgttactttatatactgttattattatagtttatcatgtctttagaattatattctggaaacctccttactctaccttttcccttgctgcagCATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCA
upper sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------------------------------tcacagtcccctgctcttgtcatctcctatgcagctggaatggcacttttctgctagtgtattttatgtgcatcctttttcactggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
||||| | | || ||| | | || | | | || |||| | | ||| | || | | | | | |||| ||||||||| |||||| | ||||||||||| |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||
gtaagtttggatagatttcatgcatatgggcagatgcaaatatttggtcttgaaaataacaataaaataatcacatccaacctcttctgttcttgtcattgtgac-gttttagccctttagtatcattgtgtctttttaatgataaaata-attcattttta---tgcagCAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttctgctagtgtattttatgtgcatcctttttcactggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
tcttt CT-rich tract
tgtattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcacagtcccctgctcttgtcatctcctatgcagctggaatggcacttttctgctagtgtattttatgtgcatcctttttcactggtctttaaattgcagCAAGCATTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTG
- - - -cccctgc
- - - - - - - -cttgtca
- - - - - - - - - - - - -cctatgc
- - - - - - - - - - - - - - - - - - - - - - - - ttctgct