1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ataccatctcaattttcattcctttttttgtacctctgaacagtatttgcagcagtttgtgggcgaattattttctaaatgcaatttgatatttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAACTTGGGGTTGTGTTTCAACCAG
species | Glycine max |
transcript | GLYMA17G03010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGG GTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAAEST: gi|207843106|gb|GD815056.1|GD815056
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGgtttgttttc ... atttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
EST: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGG GTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAAEST: gi|209713561|gb|BW679311.1|BW679311
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGgtttgttttc ... atttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
EST: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGG GTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAAEST: gi|16343144|gb|BI968739.1|BI968739
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGgtttgttttc ... atttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
EST: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGG GTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAAEST: gi|208171693|gb|GD967176.1|GD967176
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGgtttgttttc ... atttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
EST: AATTTGTTGAAGACCTTCCTGAGCAGCAGAATGG GTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
genomic: AATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGgtttgttttc ... atttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAA
tttgcagcagtttgtgggcgaattattttctaaatgcaatttgatatttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAACTTGGGGTTGTGTTTCAACCAG
aattattttctaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccatctcaattttcattcctttttttgtacctctgaacagtatttgcagcagtttgtgggcgaattattttctaaatgcaatttgatatttggacagGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAACTTGGGGTTGTGTTTCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -ccatctc
- - - - - - - - cattcct
- - - - - - - - - - - - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa