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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcatctcatagttgtacctctgaatatataattccatccccatgcatccctggagattacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT

Basic information

species Glycine max
transcript GLYMA17G01400.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G04340.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtttcatctcatagttgtacctctgaatatataattccatccccatgcatccctggagattacttatttg-aatttactttattgt--gcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT
|| ||||   |       |   |    |  ||   | ||  |||     |  ||    |||   |  | | |   | |  || || ||||   |||   |||||| || ||  | || |||||||| ||| | |||||||| ||||||||||| ||||||||| ||||| | ||| |||||| |||||| ||||||
gtgagttctcttgttctctaaaattgttccattcttcatgacat-----taaatatgaggaacattttgactaacagtggacctttttgttcacagAGATTTCATAAAATCGCTGATACAAGGTTTGCTAGCCGGTATTGCGTTGAAGCTTTTCCTCATCTTTCTGCCAGCCATACTGATGACCATGTCCAAATTT

upper sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtttcatctcatagttgtacctctgaat-atataattccatccccatgcatccctggagatt-acttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT
|| |||||    || |   | |  ||||   | | || |    | |   |   ||  ||   |||  ||| | |||  |||  ||||   ||||||   ||||| || ||  | || |||||||| || |||||||||||| |||||||||| |||  |||| ||||| | || |||||||||||||| ||||||
gtgagtttttcttctttactctctctcttcttgacatcagataacctgaaaaaattactaatgatggactgacttg--tttggttta--atgcagTAAATTCATGAAATCGGTGATACAAGGTTTCCTTCCGGGTATTGCACTGAAGCTTTTCCTCGCCTTTCTGCCATCCATTTTGATGATCATGTCCAAATTT

upper sequence: GLYMA17G01400.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G62320.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtttcatctcatagttgtacctctgaatatataattc-catccccatgcatccctggagattacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT
               ||| |  |      | | | | | |  |     || | ||        |||   |  ||||     |||   |||||||    || || || ||||| || ||||||||||| || |||||||  |||||||| ||| | || ||  ||||||||||||||||||||||||| ||||| 
--------------gtaggtacattctcaagttttttacttaccatttcaagaataaggcttaattcaattcttgatcaatcttgcgtgtgcagCAAGTTAATGAAATCATTGATCCAAGGTTTTCTTCCCGGTATTGTCTTGAAGCTCTTTTTGATATTCCTGCCAACAATATTGATGATCATGTCGAAATTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193528611|gb|FK486843.1|FK486843
EST:     ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAAT                         TCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA
genomic: ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAATgtaagtttca ... tattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA
EST: gi|193694174|gb|FK630298.1|FK630298
EST:     ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAAT                         TCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA
genomic: ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAATgtaagtttca ... tattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA
EST: gi|193517271|gb|FK477278.1|FK477278
EST:     ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAAT                         TCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA
genomic: ATTGACGGAATCCAGAAAAGAGCGCCATGGTTGAATCCTCTTATTGAAATgtaagtttca ... tattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccatccccatgcatccctggagattacttatttgaatttactttattgtgcagTCCTTTCATTAAGTCATTCATTCAAGGTTTTCTACCGGGTATTGCATTGAAGCTTTTTCTCATCTTTTTGCCAACAATATTGATGATCATGTCAAAATTT
                                      tttacttt  CT-rich tract
                      agattacttatttgaa  TA-rich tract