1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcttgcttctttgctctcctatttttctgttattttctctatttatttaggatctttagcaattcatatggtgttagcaactactgcttacacatctcaaggtggcatactaacaattaattgatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAAAGATTTCAGCTTTCCAAGCATTTCTCCTTCTCCTGGCCC
species | Glycine max |
transcript | GLYMA17G00740.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG TGGGGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTEST: gi|58018610|gb|CX705352.1|CX705352
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTT
EST: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG TGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTEST: gi|18735074|gb|BM528549.1|BM528549
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTT
EST: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG TGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTEST: gi|193556464|gb|FK511113.1|FK511113
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTT
EST: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGGTCATCCAAG TGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTEST: gi|11412572|gb|BF424583.1|BF424583
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTT
EST: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAG TGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTEST: gi|192317031|gb|FK007826.1|FK007826
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTT
EST: TATGATGACA-TGCAATAACAA-TGCTGTTGAGATT-ATGATCATCCA-G TGGAGCTGT-CATT
genomic: TATGATGACAATGCAATAACAAATGCTGTTGAGATTTATGATCATCCAAGgtcttgcttc ... gatattccagTGGAGCTGTTCATT
caactactgcttacacatctcaaggtggcatactaacaattaattgatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAAAGATTTCAGCTTTCCAAGCATTTCTCCTTCTCCTGGCCC
atactaacaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgcttctttgctctcctatttttctgttattttctctatttatttaggatctttagcaattcatatggtgttagcaactactgcttacacatctcaaggtggcatactaacaattaattgatattccagTGGAGCTGTTCATTTCATGGCTTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAAAGATTTCAGCTTTCCAAGCATTTCTCCTTCTCCTGGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT