1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtttgctagtgggttctggaattgtttttgttttatgctagtttatctgccagttagctaggatgccatcaatgacatgttttctaactctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGT
species | Glycine max |
transcript | GLYMA17G00560.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|192298363|gb|FG992123.1|FG992123
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|13791187|gb|BG653778.1|BG653778
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|151411149|gb|EV280960.1|EV280960
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCCGATGATCCTGAGGATGTG AAAGCTTCAAA-CGCAAGAAA-TACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|208323986|gb|GE121339.1|GE121339
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: TAGAGGCTGATTGTATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|207843163|gb|GD815113.1|GD815113
genomic: TAGAGGCTGA-TG-ATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: TAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|9258723|gb|BE346870.1|BE346870
genomic: TAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|192306193|gb|FG995043.1|FG995043
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|192306183|gb|FG995033.1|FG995033
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGEST: gi|163926880|gb|EH039330.1|EH039330
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
EST: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTG AAAGCCTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
genomic: GGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGgtgagttgtt ... ctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATG
atctgccagttagctaggatgccatcaatgacatgttttctaactctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGT
ttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgctagtgggttctggaattgtttttgttttatgctagtttatctgccagttagctaggatgccatcaatgacatgttttctaactctaatcacagAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG