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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG

Basic information

species Glycine max
transcript GLYMA16G32820.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G51710.2 (Arabidopsis thaliana), 3'ss of exon 10
---gtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG
    | |  |||       | | |  ||   || | || |   |  | ||  |    ||| |   | ||  ||  |  |||  | ||  |  | |   ||| |||||||||| ||||||||||| || ||||| ||||  | | ||||||||| ||||||||| || ||||  ||||| ||||||
gtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttccggtttca---tctcagagtttctgtttctaatccacatgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG

upper sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 10
gtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG
|||  |||||  | ||||||       ||||| ||    ||  ||    |||||      | | | |   ||||  | |  |  ||    ||  ||||||| ||||||| |||||  |||| || ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| |||
gtactttttctgaacatttctg-----atacttcactattttcttctcttggttgccgcaaatatgt---catgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG
    ttttaat  putative branch site (score: 3)
                                  tttatttttacctttt  putative PPT
                           ttcattatttattttt  TA-rich tract