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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatactgttaatggaaattttagtacaaacttttaccttccctataacataaatgatatagatttgaatttttttccccagATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA

Basic information

species Glycine max
transcript GLYMA16G32090.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32090.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------gtaagatactgttaatggaaattttagta-caaacttttaccttcccta--taacataaatgatatagatttgaatttttttccccagATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA
                            ||    | || |   ||   |||   ||| | ||  |||   | |  ||  | |||| | | ||  | || || ||   ||| |  || ||||| || |||||||||||  | |||||||| ||||||||||||||||||||| || |||| | ||||||| | | |||| ||   || ||| |||| 
gtatgatcctgcagatggatggtcttctgttgtttgct-tctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttc--agGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttaccttccctataacataaatgatatagatttgaatttttttccccagATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA
               ctataac  putative branch site (score: 3)
                                          tttttttcccc  putative PPT
                tataacataaatgata  TA-rich tract