Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatgcataattgccatatgatatcacatctgttttaaataatcataagattgcatgatctatcctgtttccccaaatattaacttgcatattttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG

Basic information

species Glycine max
transcript GLYMA16G30030.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 6
tccatgcataattgc-catatgatatca-catctgttttaaat-aatcataagattgcatgatcta-tcctgtttccccaa-atattaacttgcatattttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG
    |   |  |||   ||   |||||| | | || || |  | | |||| |  || |||| |  | ||| | || ||  | |||||   || ||| |  ||||||| || ||||| |||||||| |||||||||||||||||||| || |||||||| ||||||
----tagtttcttgtgtatcgaatatcaacctatgcttgaccttagtcatgatgtt-catgttaaaatccagcttacctgacatatttcattacatgtcatgcagATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAG

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 7
lower sequence: PP1S8_299V6.1 (Physcomitrella patens), 3'ss of exon 8
tccatgcataattgccatatgatatcacatctgtt-----ttaaataatcataagattgcatgatctatcctgtttccccaaatattaacttgcatattttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG
  || | |   ||   |||     |  |     ||     |||   | ||||   |||||| ||    |   | |     |  |  | || | | |  | |||||||  | |  ||||| | ||     || || ||||||||||| ||||||||||||||||||
ctcaag-acggttaaaatacttctttgcgctccttggttgttagcaattcatggtattgcaaga---gtagggatcttatacttcctgacatac-tgctctgcagATTTCTGCTCAATCTTTTCTCAAGTCCTTTAAGGGAAGCCCGTATTGGATGGCTCCTGAG

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 7
lower sequence: PP1S10_200V6.2 (Physcomitrella patens), 3'ss of exon 8
-tccatgcataattgccatatgatatcacatctgttttaaataatcataagattgcatgatctatcctgtttccccaaatattaacttgcat-attttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG
 |   |    | |       |  |   |      ||||  ||  ||    | | | | |  ||  | |  |||| ||  |||       |||  |  |||||||  | |  ||||| | ||     || ||||||||||||||||| |||||||||||||||
gtatttttccagtccttggtttttgaaatgctgcttttcgattctctcttgttagaaggtact--ctttgttcctcatgtatcctgagacattgtgatgcagATTTCTGCTCAATCCTTTCTCCAGTCTTTCAAGGGAAGCCCTTACTGGATGGCTCCTGAG

upper sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 7
lower sequence: PP1S387_39V6.1 (Physcomitrella patens), 3'ss of exon 6
-----tccatgcataattgccatatgatatcacatctgttttaaataatcataagattgcatgatctatcctgtttccccaaatattaacttgcatattttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG
       || | |  || | | |  |   ||    ||||    | |   |||    | ||| ||  |||    | || |    |  |  |  |  |  | |||||||  | |  ||||| | ||     || |||||||||||||||||||||||||||||||||
gttaagtcacgtaggataggccttcgtgttcctcactgtcagcagt--ccatgctgtcgcaagag-tatgg-atctcacgtgctcctggcacgt-tgctctgcagATTTCTGCTCAATCTTTTCTCCAGTCTTTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagattgcatgatctatcctgtttccccaaatattaacttgcatattttgcagATAACAGGGCAATCATGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAG
                                 tattaac  putative branch site (score: 1)
                              aaatattaacttgcat  TA-rich tract