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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgatcattattttctttcttctatatatttaagtattactttctaacccttgagatgtacatgcactgtaaacgtgattcatgatcaagtgtttgtcattatgagcagATTGATGCGGCCGAAATGATAGAAGAGGAGGAAGTTGTAGAGCAAAAGTACGTTTTGCTATCTTTAATACTACTTTGTGTTCTGTTTTCATGTGTTTTAT

Basic information

species Glycine max
transcript GLYMA16G28350.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040056|gb|BM308350.1|BM308350
EST:     TGATTCAAGAAGACTTGCAGGAGGTGGATGACCGGTTGGAAGAAGAAGAG                         ATTGATGCGGCCGAAATGATAGAAGAGGAGGAAGTTGTAGAGCAAAAG
genomic: TGATTCAAGAAGACTTGCAGGAGGTGGATGACCGGTTGGAAGAAGAAGAGgtgatgatca ... ttatgagcagATTGATGCGGCCGAAATGATAGAAGAGGAGGAAGTTGTAGAGCAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtacatgcactgtaaacgtgattcatgatcaagtgtttgtcattatgagcagATTGATGCGGCCGAAATGATAGAAGAGGAGGAAGTTGTAGAGCAAAAGTACGTTTTGCTATCTTTAATACTACTTTGTGTTCTGTTTTCATGTGTTTTAT
                                          tcattat  TA-rich tract