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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtactatgttatgatgcaatcttggtcttctgtgtagattgaaaatgctttgtcaacatggcatgtttgtacgagtttaagtgttcaactgtgatgctattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA

Basic information

species Glycine max
transcript GLYMA16G28080.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28080.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 8
--------gtgagtactatgttatgatgcaatcttggtcttctgtg--tagattgaaaatgctttg--------tcaacatggcatgtttgtacgagtttaag----tgttcaactgtgatgctattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA
        |||| | || | ||    |||| || |||  || ||||  |     | |      |||        || ||||     | ||  |    || ||     | ||   || |  |    ||  ||||||||| |||||||| ||||||||||||||  ||||||||||||| || |||||||| || ||||||||||||||||| ||||| |||| |||||||||||
gtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682225|gb|FK622959.1|FK622959
EST:     CCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTACCTTAGGTACAAGAATGGTGTTCGTGACATTGAAGGAAATGAATT
genomic: CCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacta ... tattctacagGTTTT-CCTT-GGT-C-AGAATGGTGTTCGTGACATTGAAGGAAATGAATT
EST: gi|193727381|gb|FK663255.1|FK663255
EST:     CCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTACCTTAGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTAC
genomic: CCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacta ... tattctacagGTTTT-CCTT-GGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTAC
EST: gi|193303195|gb|FK267951.1|FK267951
EST:     GTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCT
genomic: GTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacta ... tattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCT
EST: gi|193569713|gb|FK524448.1|FK524448
EST:     GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
genomic: GTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacta ... tattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCT
EST: gi|193658419|gb|FK605918.1|FK605918
EST:     GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
genomic: GTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacta ... tattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacatggcatgtttgtacgagtttaagtgttcaactgtgatgctattctacagGTTTTCCTTGGTCAGAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA
                                            ctattct  CT-rich tract
                     agtttaa  TA-rich tract