1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatggagcatttttagcttctgttcctgtttagtcactgtaattttgtctttaaaagttctgtggtttataattgcttaatcaatttaatttatatgcagACGAATAATTTGGTTTGGTGATCTGAATTATCGTATCAACTTATCAAATGTGGAAACAAAAGCTCTTATCTCAAAAAAACAGTGGTCAAAATTGGTTGAG
species | Glycine max |
transcript | GLYMA16G27760.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCATTCACTTTCTTATGTTGGACTTCCCAAAAATATCCTTGATCATGA ACGAATAATTTGGTTTGGTGATCTGAATTATCGTATCAACTTATCAAATGTEST: gi|207736385|gb|GD712600.1|GD712600
genomic: TTTCATTCACTTTCTTATGTTGGACTTCCCAAAAATATCCTTGATCATGAgtgagtgcaa ... ttatatgcagACGAATAATTTGGTTTGGTGATCTGAATTATCGTATCAACTTATCAAATGT
EST: TTTCATTCACTTTCTTATGTTGGACTTCCCAAAAATATCCTTGATCATGA ACGAATAATTTGGT
genomic: TTTCATTCACTTTCTTATGTTGGACTTCCCAAAAATATCCTTGATCATGAgtgagtgcaa ... ttatatgcagACGAATAATTTGGT
tgtctttaaaagttctgtggtttataattgcttaatcaatttaatttatatgcagACGAATAATTTGGTTTGGTGATCTGAATTATCGTATCAACTTATCAAATGTGGAAACAAAAGCTCTTATCTCAAAAAAACAGTGGTCAAAATTGGTTGAG
atttaat putative branch site (score: 4)
tggtttataattgctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatggagcatttttagcttctgttcctgtttagtcactgtaattttgtctttaaaagttctgtggtttataattgcttaatcaatttaatttatatgcagACGAATAATTTGGTTTGGTGATCTGAATTATCGTATCAACTTATCAAATGTGGAAACAAAAGCTCTTATCTCAAAAAAACAGTGGTCAAAATTGGTTGAG
gatggag
- - - - - - - - - -ctgttcc
- - - - - - - - - - - - - - - - - cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgg